8UN5
KRAS-G13D-GDP in complex with Cpd38 ((E)-1-((3S)-4-(7-(6-amino-4-methyl-3-(trifluoromethyl)pyridin-2-yl)-6-chloro-8-fluoro-2-(((S)-2-methylenetetrahydro-1H-pyrrolizin-7a(5H)-yl)methoxy)quinazolin-4-yl)-3-methylpiperazin-1-yl)-3-(1,2,3,4-tetrahydroisoquinolin-8-yl)prop-2-en-1-one)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 23-ID-B |
Synchrotron site | APS |
Beamline | 23-ID-B |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-03-15 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.979110 |
Spacegroup name | P 1 |
Unit cell lengths | 38.960, 41.620, 55.550 |
Unit cell angles | 90.17, 91.35, 116.28 |
Refinement procedure
Resolution | 31.190 - 1.310 |
R-factor | 0.1797 |
Rwork | 0.178 |
R-free | 0.21200 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4tqa |
RMSD bond length | 0.004 |
RMSD bond angle | 0.988 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (dev_3936) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 31.190 | 1.450 |
High resolution limit [Å] | 1.310 | 1.310 |
Rmerge | 0.041 | 1.463 |
Rmeas | 2.069 | |
Rpim | 0.041 | 1.463 |
Number of reflections | 45350 | 2267 |
<I/σ(I)> | 11.5 | 0.7 |
Completeness [%] | 38.0 | |
Redundancy | 3 | |
CC(1/2) | 0.998 | 0.366 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | EVAPORATION | 4.5 | 277 | 0.1 M Sodium acetate pH 4.5, 30% w/v PEG 5,000MME |