8UN4
KRAS-G13D-GDP in complex with Cpd36 ((E)-1-((3S)-4-(7-(6-amino-4-methyl-3-(trifluoromethyl)pyridin-2-yl)-6-chloro-8-fluoro-2-(((S)-2-methylenetetrahydro-1H-pyrrolizin-7a(5H)-yl)methoxy)quinazolin-4-yl)-3-methylpiperazin-1-yl)-3-(4-((dimethylamino)methyl)-5-methylpyridin-2-yl)prop-2-en-1-one)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 23-ID-B |
Synchrotron site | APS |
Beamline | 23-ID-B |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-03-15 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.979110 |
Spacegroup name | P 21 2 21 |
Unit cell lengths | 40.730, 55.690, 85.490 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 42.740 - 1.570 |
R-factor | 0.1913 |
Rwork | 0.190 |
R-free | 0.21510 |
Structure solution method | MOLECULAR REPLACEMENT |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.19.1-4122) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 46.663 | 46.663 | 1.721 |
High resolution limit [Å] | 1.570 | 4.854 | 1.574 |
Rmerge | 0.077 | 0.056 | 1.873 |
Rmeas | 0.081 | 0.059 | 2.006 |
Rpim | 0.026 | 0.020 | 0.707 |
Total number of observations | 9088 | 8258 | |
Number of reflections | 21157 | 1058 | 1058 |
<I/σ(I)> | 16.7 | 33.9 | 1.3 |
Completeness [%] | 93.4 | 98.5 | 54.8 |
Redundancy | 9.3 | 8.6 | 7.8 |
CC(1/2) | 0.999 | 0.998 | 0.532 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | EVAPORATION | 291 | 0.1M MMT pH 5.0, 25 % w/v Polyethylene glycol 1,500 |