8UM3
PanDDA analysis -- Crystal Structure of Zika virus NS3 Helicase in complex with Z203039992
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-11-21 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 0.92124 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 53.644, 69.588, 57.552 |
Unit cell angles | 90.00, 92.19, 90.00 |
Refinement procedure
Resolution | 25.010 - 1.925 |
R-factor | 0.1928 |
Rwork | 0.191 |
R-free | 0.23900 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.008 |
RMSD bond angle | 0.910 |
Data reduction software | autoPROC |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | BUSTER (2.10.4 (17-FEB-2023)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 57.510 | 2.030 |
High resolution limit [Å] | 1.925 | 1.930 |
Rmerge | 0.184 | 1.902 |
Rmeas | 0.199 | 2.051 |
Rpim | 0.076 | 0.764 |
Total number of observations | 32621 | |
Number of reflections | 32130 | 4613 |
<I/σ(I)> | 7.4 | 1.1 |
Completeness [%] | 100.0 | |
Redundancy | 6.8 | 7.1 |
CC(1/2) | 0.996 | 0.420 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 293 | 0.12 M NPS Mix (0.3 M Sodium phosphate dibasic dihydrate, 0.3 M Ammonium sulphate and 0.3 M Sodium nitrate - Molecular Dimensions), 0.1 M MES/Imidazole pH 6.5 (Molecular Dimensions) and 33% Precipitant Mix 4 (11% MPD, 11% PEG 1,000 e 11% PEG 3,350 |