8UKR
RNA polymerase II elongation complex with Fapy-dG lesion soaking with ATP before chemistry
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 5.0.3 |
Synchrotron site | ALS |
Beamline | 5.0.3 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2023-04-27 |
Detector | DECTRIS PILATUS3 2M |
Wavelength(s) | 0.9765 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 159.617, 222.632, 190.697 |
Unit cell angles | 90.00, 97.69, 90.00 |
Refinement procedure
Resolution | 47.960 - 3.780 |
R-factor | 0.2623 |
Rwork | 0.261 |
R-free | 0.30980 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.005 |
RMSD bond angle | 0.898 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHENIX |
Refinement software | PHENIX ((1.20.1_4487: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 47.960 | 3.660 |
High resolution limit [Å] | 3.590 | 3.590 |
Rmerge | 0.574 | 4.892 |
Rmeas | 0.620 | 2.161 |
Rpim | 0.232 | 2.161 |
Number of reflections | 76483 | 4424 |
<I/σ(I)> | 4.5 | 0.4 |
Completeness [%] | 99.4 | |
Redundancy | 7 | |
CC(1/2) | 0.985 | 0.464 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 295 | 390 mM ammonium phosphate (pH 6.0), 5 mM DTT, 5 mM dioxane, and 9-13% (w/v) PEG 6,000 |