8UGM
FphE, Staphylococcus aureus fluorophosphonate-binding serine hydrolases E, boronic acid-based compound Z27 bound
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX2 |
Synchrotron site | Australian Synchrotron |
Beamline | MX2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-12-01 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.9537 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 46.723, 73.971, 73.183 |
Unit cell angles | 90.00, 91.43, 90.00 |
Refinement procedure
Resolution | 39.820 - 1.650 |
R-factor | 0.1516 |
Rwork | 0.150 |
R-free | 0.18930 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.010 |
RMSD bond angle | 1.128 |
Data reduction software | XDS (20220220) |
Data scaling software | Aimless (0.7.8) |
Phasing software | PHASER (2.8.3) |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 46.710 | 1.680 |
High resolution limit [Å] | 1.650 | 1.650 |
Rmerge | 0.112 | 0.944 |
Rmeas | 0.123 | 1.072 |
Rpim | 0.050 | 0.494 |
Total number of observations | 350545 | 11116 |
Number of reflections | 59687 | 2508 |
<I/σ(I)> | 9.4 | 1.7 |
Completeness [%] | 99.1 | |
Redundancy | 5.9 | 4.4 |
CC(1/2) | 0.996 | 0.536 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 289.15 | 20uL 25.0 mg/mL FphE (10mM HEPES pH 7.5, 100mM NaCl) were mixed with 3uL Z27 (50mM in DMSO) and incubated at 4C overnight. 0.3 uL FphE-Z27 solution was mixed with 0.15 uL of reservoir solution. Sitting drop reservoir contained 25 uL of 180mM Calcium acetate, 100mM MES pH 6.5, 22.5% PEG 2000 MME. Crystal appeared within 2.5 days at 16C and grew until 14.5 days when it was frozen in a solution of ~25% glycerol, 75% reservoir. |