8UCG
Thermophilic RNA Ligase from Palaeococcus pacificus K92A
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX2 |
Synchrotron site | Australian Synchrotron |
Beamline | MX2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-03-10 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.953725 |
Spacegroup name | P 2 21 21 |
Unit cell lengths | 80.793, 99.699, 142.477 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 42.880 - 1.860 |
R-factor | 0.2087 |
Rwork | 0.207 |
R-free | 0.23520 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.006 |
RMSD bond angle | 0.814 |
Data reduction software | Zanuda (v.7.1) |
Data scaling software | XDS (v.7.1) |
Phasing software | PHENIX (1.19.2_4158) |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 42.880 | 1.926 |
High resolution limit [Å] | 1.860 | 1.860 |
Rmerge | 0.074 | 0.849 |
Number of reflections | 97092 | 9589 |
<I/σ(I)> | 17.65 | |
Completeness [%] | 99.9 | 99.89 |
Redundancy | 13.8 | 14.2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 291.15 | 80 mM strontium chloride hexahydrate, 20 mM magnesium chloride hexahydrate, 40 mM sodium cacodylate trihydrate pH 6.5, 20% v/v (+/-)-2-methyl-2,4-pentanediol, 12 mM spermine tetrahydrochloride |