8UC6
Calpain-7:IST1 Complex
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL14-1 |
Synchrotron site | SSRL |
Beamline | BL14-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-07-27 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 1.19499 |
Spacegroup name | P 65 2 2 |
Unit cell lengths | 87.841, 87.841, 183.894 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 39.631 - 2.701 |
R-factor | 0.2184 |
Rwork | 0.211 |
R-free | 0.28470 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2kw3 |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.4) |
Phasing software | PHASER |
Refinement software | PHENIX (1.16) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 39.631 | 39.630 | 2.830 |
High resolution limit [Å] | 2.700 | 8.960 | 2.700 |
Rmerge | 0.855 | 0.144 | 6.810 |
Rmeas | 0.859 | 0.145 | 6.843 |
Rpim | 0.080 | 0.015 | 0.666 |
Total number of observations | 38774 | 164526 | |
Number of reflections | 12228 | 417 | 1581 |
<I/σ(I)> | 11 | 39.6 | 1.5 |
Completeness [%] | 100.0 | 99.1 | 99.9 |
Redundancy | 114.3 | 93 | 104.1 |
CC(1/2) | 0.998 | 0.999 | 0.650 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 4.2 | 294 | Both proteins were purified and concentrated to 20 mg/ml in buffer containing 25 mM Tris, pH 7.2, 150 mM NaCl, 1 mM TCEP, 0.5 mM EDTA. The proteins were mixed in a 1:2 molar ratio (CAPN7:IST1). Crystals grew at 21 C (294 K) in Rigaku Wizard Cryo condition D5 (25% (v/v) 1,2-Porpanediol, 100 mM Sodium phosphate dibasic/Citric acid pH 4.2, 5% (w/v) PEG 3000, 10% (v/v) Glycerol. Crystals were transferred briefly to crystallization buffer supplemented with 25% added glycerol prior to plunging in liquid nitrogen |