8U9N
Structure of the SARS-CoV-2 main protease in complex with inhibitor MPI64
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-002 |
Temperature [K] | 120 |
Detector technology | PIXEL |
Collection date | 2021-07-11 |
Detector | Bruker PHOTON II |
Wavelength(s) | 1.54301 |
Spacegroup name | I 1 2 1 |
Unit cell lengths | 51.849, 81.018, 90.307 |
Unit cell angles | 90.00, 96.77, 90.00 |
Refinement procedure
Resolution | 30.720 - 1.700 |
R-factor | 0.2201 |
Rwork | 0.219 |
R-free | 0.24220 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.009 |
RMSD bond angle | 1.248 |
Data reduction software | PROTEUM PLUS |
Data scaling software | Aimless |
Phasing software | PHENIX |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 30.720 | 1.761 |
High resolution limit [Å] | 1.700 | 1.700 |
Rmerge | 0.081 | 1.117 |
Rmeas | 0.087 | |
Rpim | 0.029 | 0.536 |
Number of reflections | 40710 | 4017 |
<I/σ(I)> | 12.11 | 1.4 |
Completeness [%] | 99.4 | 98.91 |
Redundancy | 2 | |
CC(1/2) | 0.999 | 0.759 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 289 | 0.2 M Ammonium phosphate dibasic, 17% W/v PEG3350, pH8.0 |