8U5M
Structure of Sts-1 HP domain with rebamipide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-E |
Synchrotron site | APS |
Beamline | 24-ID-E |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-07-17 |
Detector | DECTRIS EIGER2 S 16M |
Wavelength(s) | 0.979 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 82.650, 122.274, 99.588 |
Unit cell angles | 90.00, 112.41, 90.00 |
Refinement procedure
Resolution | 73.550 - 2.460 |
R-factor | 0.23119 |
Rwork | 0.229 |
R-free | 0.27448 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5vr6 |
RMSD bond length | 0.002 |
RMSD bond angle | 1.209 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0258) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 122.270 | 2.520 |
High resolution limit [Å] | 2.460 | 2.460 |
Rmerge | 0.083 | 0.824 |
Rmeas | 0.103 | 1.019 |
Rpim | 0.060 | 0.591 |
Total number of observations | 178798 | 12714 |
Number of reflections | 65248 | 4601 |
<I/σ(I)> | 10 | 1.3 |
Completeness [%] | 98.3 | |
Redundancy | 2.7 | 2.8 |
CC(1/2) | 0.996 | 0.483 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 291 | 0.1 Hepes 10% ethylene glycol 0.3 M magnesium chloride 20% PEG 8000 |