8U52
Co-crystal structure of human transthyretin conjugated to the stilbene substructure derived from reaction with the fluorogenic covalent kinetic stabilizer A2
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 5.0.1 |
Synchrotron site | ALS |
Beamline | 5.0.1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-12-20 |
Detector | DECTRIS PILATUS3 2M |
Wavelength(s) | 0.97741 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 42.960, 85.201, 63.751 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 42.640 - 1.500 |
R-factor | 0.16629 |
Rwork | 0.165 |
R-free | 0.19389 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.046 |
RMSD bond angle | 2.890 |
Data reduction software | XDS |
Data scaling software | SCALA |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 42.640 | 1.580 |
High resolution limit [Å] | 1.500 | 1.500 |
Rpim | 0.008 | 0.136 |
Number of reflections | 36591 | 4326 |
<I/σ(I)> | 42.8 | 4.9 |
Completeness [%] | 95.7 | |
Redundancy | 12.4 | |
CC(1/2) | 1.000 | 0.940 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 298 | The WT-TTR was concentrated to 4 mg/mL in 10 mM sodium phosphate, 100 mM KCl, at pH 7.6 and co-crystallized at room temperature using the vapor diffusion sitting drop method. |