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8U2W

Glucose-6-phosphate 1-dehydrogenase (G6PDH) from Crithidia fasciculata (NADP bound)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsNSLS-II BEAMLINE 19-ID
Synchrotron siteNSLS-II
Beamline19-ID
Temperature [K]100
Detector technologyPIXEL
Collection date2023-05-08
DetectorDECTRIS EIGER2 XE 9M
Wavelength(s)0.9795
Spacegroup nameC 2 2 21
Unit cell lengths121.332, 123.258, 162.171
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution33.870 - 2.350
R-factor0.2167
Rwork0.215
R-free0.24790
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.004
RMSD bond angle0.715
Data reduction softwareXDS
Data scaling softwareAimless
Phasing softwarePHASER
Refinement softwarePHENIX ((1.21rc1_4933: ???))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]86.4702.410
High resolution limit [Å]2.3502.350
Rmerge0.1171.911
Rmeas0.1211.988
Rpim0.0330.544
Total number of observations69461749526
Number of reflections508963733
<I/σ(I)>13.71.6
Completeness [%]100.0
Redundancy13.613.3
CC(1/2)0.9990.705
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP4.6291Berkeley H8: 30% (w/v) PEG 4000, 100 mM Sodium acetate / Hydrochloric acid pH 4.6, 200 mM Ammonium acetate. CrfaA.01031.a.HZ1.PW39196 at 19.7 mg/mL. plate 13383 well H8 drop 2. Puck: PSL-1713, Cryo: Direct. 2mM NADPH and BG6 added prior to crystallization. No BG6 bound and NADPH is partially disordered.

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PDB entries from 2024-07-17

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