8U2V
Crystal Structure of methylglyoxal synthase from Borrelia burgdorferi
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS-II BEAMLINE 19-ID |
Synchrotron site | NSLS-II |
Beamline | 19-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2023-08-06 |
Detector | DECTRIS EIGER2 XE 9M |
Wavelength(s) | 0.9795 |
Spacegroup name | P 43 21 2 |
Unit cell lengths | 110.866, 110.866, 91.256 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 34.250 - 2.500 |
R-factor | 0.1998 |
Rwork | 0.198 |
R-free | 0.23570 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.006 |
RMSD bond angle | 0.556 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX ((1.21rc1_4933: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 49.580 | 2.600 |
High resolution limit [Å] | 2.500 | 2.500 |
Rmerge | 0.150 | 2.994 |
Rmeas | 0.153 | 3.055 |
Rpim | 0.032 | 0.601 |
Total number of observations | 482366 | 57466 |
Number of reflections | 20304 | 2255 |
<I/σ(I)> | 17 | 1.7 |
Completeness [%] | 100.0 | |
Redundancy | 23.8 | 25.5 |
CC(1/2) | 1.000 | 0.771 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 291 | Morpheus Fusion D7: 20% (v/v) Ethylene glycol; 10% (w/v) PEG 8000, 0.05M Tris (base); 0.05M BICINE pH 8.5, 0.01M Sodium fluoride, 0.01M Sodium bromide, 0.01M Sodium iodide, 0.2 M xylitol, 0.02 M D-{-)-fructose, 0.02 M D-sorbitol, 0.02 M myo-inositol, 0.02 M L-rhamnose monohydrate. BobuA.00692.a.A1.PB00123 at 15 mg/mL. plate 13451 well D7 drop1. Puck: PSL-0612, Cryo: direct. |