8U2F
Vibrio parahaemolyticus ToxS periplasmic domain
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS-II BEAMLINE 17-ID-1 |
Synchrotron site | NSLS-II |
Beamline | 17-ID-1 |
Temperature [K] | 80 |
Detector technology | PIXEL |
Collection date | 2023-02-12 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 0.920112 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 53.850, 58.330, 89.680 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 26.930 - 2.000 |
R-factor | 0.2133 |
Rwork | 0.208 |
R-free | 0.26340 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.007 |
RMSD bond angle | 0.928 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHENIX |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 26.930 | 2.076 |
High resolution limit [Å] | 2.000 | 2.000 |
Rmerge | 0.103 | |
Rmeas | 0.110 | |
Number of reflections | 19563 | 1912 |
<I/σ(I)> | 10.7 | |
Completeness [%] | 99.8 | |
Redundancy | 8.8 | |
CC(1/2) | 0.998 | 0.548 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 298.15 | 100 mM Hepes free acid, Sodium hydroxide pH 7.5, 200 mM Sodium malonate dibasic pH 7.0, 20% (w/v) PEG 2000 |