8TFS
Crystal structure of the Rhodanese-like domain of Vretifemale_1082 from Volvox reticuliferus
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-C |
Synchrotron site | APS |
Beamline | 24-ID-C |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-12-14 |
Detector | DECTRIS EIGER2 X 16M |
Wavelength(s) | 0.72932 |
Spacegroup name | P 31 2 1 |
Unit cell lengths | 66.390, 66.390, 141.390 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 53.260 - 1.950 |
R-factor | 0.1879 |
Rwork | 0.185 |
R-free | 0.20960 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.011 |
RMSD bond angle | 0.904 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 57.500 | 2.020 |
High resolution limit [Å] | 1.950 | 1.950 |
Rmerge | 0.084 | 0.846 |
Rmeas | 0.089 | 0.890 |
Rpim | 0.028 | 0.276 |
Number of reflections | 50761 | 2645 |
<I/σ(I)> | 14.03 | 1.77 |
Completeness [%] | 99.9 | 99.77 |
Redundancy | 9.8 | 10.1 |
CC(1/2) | 0.999 | 0.900 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 0.2 M L-Proline, 0.1 M HEPES pH 7.5, 10% PEG3350. Cryoprotectant: 0.2 M L-Proline, 0.1 M HEPES pH 7.5, 23% PEG3350, 5% PEG400 |