8TDH
Structure of trehalose bound Alistipes sp. Glucoside-3-dehydrogenase AL3
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-D |
Synchrotron site | APS |
Beamline | 21-ID-D |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2023-03-11 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 1.0332 |
Spacegroup name | I 1 2 1 |
Unit cell lengths | 186.581, 57.221, 224.962 |
Unit cell angles | 90.00, 106.58, 90.00 |
Refinement procedure
Resolution | 162.267 - 2.950 |
Rwork | 0.195 |
R-free | 0.24710 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.011 |
RMSD bond angle | 5.641 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0425) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 162.270 | 3.060 |
High resolution limit [Å] | 2.950 | 2.950 |
Rmerge | 0.141 | 0.462 |
Rmeas | 0.199 | 0.654 |
Rpim | 0.141 | 0.462 |
Number of reflections | 43707 | 3079 |
<I/σ(I)> | 3.5 | |
Completeness [%] | 89.9 | |
Redundancy | 2.7 | 1.9 |
CC(1/2) | 0.950 | 0.497 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 0.25 M Sodium Malonate 17% PEG 3350 |