8TC9
Human asparaginyl-tRNA synthetase bound to OSM-S-106
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX2 |
Synchrotron site | Australian Synchrotron |
Beamline | MX2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-11-24 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.9537 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 115.088, 126.810, 161.139 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 49.460 - 2.000 |
R-factor | 0.1835 |
Rwork | 0.182 |
R-free | 0.22070 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5xix |
RMSD bond length | 0.007 |
RMSD bond angle | 0.872 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 49.460 | 2.030 |
High resolution limit [Å] | 2.000 | 2.000 |
Rmerge | 0.180 | 2.306 |
Rmeas | 0.212 | 2.718 |
Rpim | 0.111 | 1.419 |
Number of reflections | 159099 | 7783 |
<I/σ(I)> | 6.4 | 0.8 |
Completeness [%] | 99.9 | |
Redundancy | 6.9 | |
CC(1/2) | 0.997 | 0.471 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 295 | 20% (v/v) glycerol, 40 mM potassium phosphate and 14% polyethylene glycol 8,000, and 100-mM Tris pH 7.6 |