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8TBX

Crystal structure of human DDX1 helicase in complex with ADP

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 24-ID-C
Synchrotron siteAPS
Beamline24-ID-C
Temperature [K]100
Detector technologyPIXEL
Collection date2023-03-10
DetectorDECTRIS EIGER2 X 16M
Wavelength(s)0.97911
Spacegroup nameP 21 21 21
Unit cell lengths50.708, 71.517, 138.496
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution49.800 - 2.710
R-factor0.20678
Rwork0.203
R-free0.28647
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.008
RMSD bond angle1.374
Data reduction softwareHKL-3000
Data scaling softwareHKL-3000
Phasing softwarePHASER
Refinement softwareREFMAC (5.8.0258)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.00050.0002.750
High resolution limit [Å]2.7007.3202.700
Rmerge0.1510.0940.967
Rmeas0.1630.1031.046
Rpim0.0610.0400.392
Total number of observations100389
Number of reflections14191804691
<I/σ(I)>5
Completeness [%]99.9100100
Redundancy7.16.86.9
CC(1/2)0.9950.9870.753
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP2910.04M Potassium phosphate monobasic,16%w/v PEG 8K,20% v/v Glycerol

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PDB entries from 2026-02-11

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