8TA0
Crystal Structure of Dihydrofolate reductase (DHFR) from Mycobacterium ulcerans Agy99 in complex with NADP and inhibitor MAM881
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SEALED TUBE |
Source details | BRUKER D8 QUEST |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2023-06-20 |
Detector | Bruker PHOTON III |
Wavelength(s) | 1.5418 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 28.631, 66.290, 44.030 |
Unit cell angles | 90.00, 91.29, 90.00 |
Refinement procedure
Resolution | 28.620 - 1.950 |
R-factor | 0.1549 |
Rwork | 0.152 |
R-free | 0.20920 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.009 |
RMSD bond angle | 1.125 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.21rc1_4933) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 44.020 | 2.000 |
High resolution limit [Å] | 1.950 | 1.950 |
Rmerge | 0.122 | 0.710 |
Rmeas | 0.132 | 0.828 |
Rpim | 0.050 | 0.418 |
Total number of observations | 82492 | 3300 |
Number of reflections | 12079 | 858 |
<I/σ(I)> | 12.4 | 2.1 |
Completeness [%] | 100.0 | |
Redundancy | 6.8 | 3.8 |
CC(1/2) | 0.995 | 0.649 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 291 | Morpheus H4: 12.5%(v/v) MPD, 12.5%(v/v) PEG 1000, 12.5%(w/v) PEG 3350, 100 mM Imidazole/MES, pH 6.5, 20 mM DL-Glutamic acid, 20 mM DL-Alanine; 20 mM Glycine, 20 mM DL-Lysine monohydrochloride and 20 mM DL-Serine. MyulA.01062.a.B13.PS38720 at 8.9 mg/mL. 2mM MAM881 and 2mM NADP added to the protein prior to crystallization. Plate 13387 well H4 drop 3, Cryo: direct |