8T9P
Crystal Structure of YR, a heterohexamer of the 4-oxalocrotonate tautomerase (4-OT) family
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 23-ID-B |
Synchrotron site | APS |
Beamline | 23-ID-B |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-10-01 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 1.0 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 110.194, 61.028, 92.141 |
Unit cell angles | 90.00, 123.82, 90.00 |
Refinement procedure
Resolution | 26.840 - 2.040 |
R-factor | 0.1946 |
Rwork | 0.192 |
R-free | 0.23020 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.008 |
RMSD bond angle | 0.995 |
Data reduction software | HKL-2000 (v723) |
Data scaling software | HKL-2000 (v723) |
Phasing software | PHENIX (1.18.2_3874) |
Refinement software | PHENIX (1.18.2_3874) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.090 |
High resolution limit [Å] | 2.040 | 5.560 | 2.050 |
Rmerge | 0.049 | 0.508 | |
Rmeas | 0.057 | 0.600 | |
Rpim | 0.029 | 0.314 | |
Number of reflections | 32458 | 1681 | 1592 |
<I/σ(I)> | 8 | ||
Completeness [%] | 99.8 | 99.3 | 99.7 |
Redundancy | 3.6 | 3.6 | 3.4 |
CC(1/2) | 0.997 | 0.791 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 277 | The hhYR-4OT was crystallized in 54-64% 2-methyl-2,4-pentanediol (MPD), 0.1M sodium cacodylate pH 6.8, and 5% polyethylene glycol (PEG) 8000 |