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8T90

Crystal structure of Terrestrivirus Inositol pyrophosphatase kinase in complex with ADP and myo-(3OH)IP5

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 22-ID
Synchrotron siteAPS
Beamline22-ID
Temperature [K]100
Detector technologyPIXEL
Collection date2021-11-02
DetectorDECTRIS EIGER X 16M
Wavelength(s)1.0
Spacegroup nameC 2 2 21
Unit cell lengths64.263, 103.120, 103.898
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution50.000 - 2.300
R-factor0.17
Rwork0.170
R-free0.22000
Structure solution methodFOURIER SYNTHESIS
Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwarePHASER
Refinement softwareREFMAC (v5)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.00050.0002.340
High resolution limit [Å]2.3006.2402.300
Rmerge0.0750.0550.726
Rmeas0.0780.0580.759
Rpim0.0220.0170.221
Total number of observations191597
Number of reflections15669867767
<I/σ(I)>11
Completeness [%]99.999.899.9
Redundancy12.211.211.7
CC(1/2)0.9960.9930.905
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP727712% PEG8000, 100mM HEPES pH 7.0, 10mM NaH2PO4, 10% Ethylene Glycol, 5mM ADP and 10mM MgCl2, then soaked in 25% PEG8000, 100mM HEPES pH 7.0, 20% Ethylene Glycol with 5mM myo-(3OH)-IP5, 5mM ADP and 10mM MgCl2

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PDB entries from 2024-07-17

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