8T88
FphE, Staphylococcus aureus fluorophosphonate-binding serine hydrolases E, Oxadiazolone JJ004 bound
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX1 |
Synchrotron site | Australian Synchrotron |
Beamline | MX1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2023-03-30 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 0.9537 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 46.743, 74.271, 73.638 |
Unit cell angles | 90.00, 91.70, 90.00 |
Refinement procedure
Resolution | 39.990 - 1.540 |
R-factor | 0.1579 |
Rwork | 0.157 |
R-free | 0.18460 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.010 |
RMSD bond angle | 1.077 |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.8) |
Phasing software | PHASER (2.8.3) |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 39.990 | 1.560 |
High resolution limit [Å] | 1.540 | 1.540 |
Rmerge | 0.037 | 1.051 |
Rmeas | 0.041 | 1.166 |
Rpim | 0.018 | 0.498 |
Total number of observations | 390181 | 18405 |
Number of reflections | 73321 | 3543 |
<I/σ(I)> | 17.5 | 1.3 |
Completeness [%] | 98.0 | |
Redundancy | 5.3 | 5.2 |
CC(1/2) | 1.000 | 0.598 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 289.15 | 13 uL 19 mg/mL FphE (10 mM HEPES pH 7.5, 10 0mM NaCl) were mixed with 5 uL JJ004 (10 mM in DMSO) and incubated at 18C overnight. 0.15 uL FphE-JJ004 solution was mixed with 0.2 uL of reservoir solution. Sitting drop reservoir contained 25 uL of 0.18 M Magnesium chloride, 0.1 M Tris pH 8.5, 22.5 % w/v Polyethylene glycol monomethyl ether 2000. Crystal was frozen in a solution of ~25% glycerol, 75% reservoir. |