8T7J
Oxygen- and PLP-dependent Cap15 holoenzyme bound with phosphate anion
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL9-2 |
Synchrotron site | SSRL |
Beamline | BL9-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-12-03 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.97946 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 142.590, 220.986, 96.735 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 38.900 - 2.400 |
R-factor | 0.2257 |
Rwork | 0.224 |
R-free | 0.26770 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.002 |
RMSD bond angle | 0.482 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.19_4092) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 38.900 | 2.460 |
High resolution limit [Å] | 2.400 | 2.400 |
Rmerge | 0.090 | 1.501 |
Rmeas | 0.093 | 1.562 |
Rpim | 0.025 | 0.462 |
Number of reflections | 60031 | 4126 |
<I/σ(I)> | 19.3 | 1.8 |
Completeness [%] | 99.5 | 99.38 |
Redundancy | 13.5 | 13 |
CC(1/2) | 1.000 | 0.881 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8 | 293 | 0.2 M sodium acetate, 17 % polyethylene glycol 3350, 10-15 mg/mL Cap15 |