8SZ3
Structure of human beta 1,3-N-acetylglucosaminyltransferase 2 with compound 7j
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 5.0.2 |
Synchrotron site | ALS |
Beamline | 5.0.2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-03-29 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.0 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 82.375, 76.405, 128.019 |
Unit cell angles | 90.00, 102.58, 90.00 |
Refinement procedure
Resolution | 29.140 - 2.320 |
R-factor | 0.2627 |
Rwork | 0.261 |
R-free | 0.28740 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7jhk |
RMSD bond length | 0.004 |
RMSD bond angle | 0.727 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 29.140 | 2.400 |
High resolution limit [Å] | 2.320 | 2.320 |
Rmerge | 0.064 | 0.462 |
Rmeas | 0.076 | 0.557 |
Rpim | 0.041 | 0.309 |
Number of reflections | 33310 | 3035 |
<I/σ(I)> | 11.9 | 2.5 |
Completeness [%] | 98.4 | 92.6 |
Redundancy | 3.3 | 3.1 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 277 | 0.1 M Hepes pH 7.0, 0.2 M Sodium Acetate, 17% PEG 4000, 15% glycerol |