Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

8SXY

X-ray crystal structure of UDP- 2,3-diacetamido-2,3-dideoxy-glucuronic acid-2-epimerase from Thermus thermophilus strain HB27 in complex with its product UDP-2,3-diacetamido-2,3-dideoxy-d-mannuronic acid at pH 5

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSEALED TUBE
Source detailsBRUKER D8 QUEST
Temperature [K]100
Detector technologyPIXEL
Collection date2022-12-16
DetectorBruker PHOTON II
Wavelength(s)1.5418
Spacegroup nameP 1 21 1
Unit cell lengths56.455, 128.796, 58.663
Unit cell angles90.00, 111.09, 90.00
Refinement procedure
Resolution41.710 - 1.800
R-factor0.1815
Rwork0.180
R-free0.21819
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.008
RMSD bond angle1.563
Data reduction softwareSAINT
Data scaling softwareSADABS
Phasing softwarePHASER
Refinement softwareREFMAC (5.8.0403)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0001.900
High resolution limit [Å]1.8001.800
Number of reflections7154510677
<I/σ(I)>17.53.5
Completeness [%]99.098.7
Redundancy7.44.4
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP5293Protein incubated with 5 mM UDP-2,3-diacetamido-2,3-dideoxy-glucuronic acid. Precipitant solution: 22-27% pentaerythritol propoxylate (5/4 PO/OH), 100 mM homopipes (pH 5)

222624

PDB entries from 2024-07-17

PDB statisticsPDBj update infoContact PDBjnumon