8SSM
Citrobacter rodentium contact dependent growth inhibition (CDI) toxin (CdiA-CT) and immunity (CdiI) complex
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 5.0.2 |
Synchrotron site | ALS |
Beamline | 5.0.2 |
Temperature [K] | 110 |
Detector technology | PIXEL |
Collection date | 2022-06-15 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 79.349, 114.410, 114.639 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 43.050 - 2.480 |
R-factor | 0.1918 |
Rwork | 0.187 |
R-free | 0.23670 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 8SSK + AlphaFold model |
RMSD bond length | 0.002 |
RMSD bond angle | 0.533 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHENIX |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 43.050 | 2.530 |
High resolution limit [Å] | 2.480 | 2.480 |
Rmerge | 0.105 | 0.805 |
Rmeas | 0.124 | 0.948 |
Rpim | 0.066 | 0.496 |
Number of reflections | 18868 | 2119 |
<I/σ(I)> | 13.1 | 2.3 |
Completeness [%] | 100.0 | 100 |
Redundancy | 6.6 | 6.9 |
CC(1/2) | 0.997 | 0.736 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.5 | 277 | 0.1 M Tris, pH 8.5, 0.2 M sodium chloride, 25% PEG3350 |