8SPI
Crystal structure of chimeric omicron RBD (strain XBB.1.5) complexed with human ACE2
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-E |
Synchrotron site | APS |
Beamline | 24-ID-E |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2023-04-08 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.979 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 78.365, 116.205, 108.767 |
Unit cell angles | 90.00, 96.60, 90.00 |
Refinement procedure
Resolution | 77.850 - 3.060 |
R-factor | 0.1927 |
Rwork | 0.190 |
R-free | 0.24350 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2ajf |
RMSD bond length | 0.003 |
RMSD bond angle | 0.476 |
Data reduction software | autoPROC |
Data scaling software | autoPROC |
Phasing software | PHASER |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 108.045 | 3.368 |
High resolution limit [Å] | 3.056 | 3.056 |
Rmerge | 0.121 | 0.881 |
Number of reflections | 24813 | 1241 |
<I/σ(I)> | 6.8 | 1.6 |
Completeness [%] | 86.8 | |
Redundancy | 3.9 | |
CC(1/2) | 0.741 | 0.653 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.2 | 298 | 100 mM Tris, pH 8.2, 24% PEG6000, 150 mM sodium chloride, 10% ethylene glycol |