8SLT
Crystal structure of human STEP (PTPN5) at physiological temperature (310 K) and ambient pressure (0.1 MPa)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | CHESS BEAMLINE 7B2 |
Synchrotron site | CHESS |
Beamline | 7B2 |
Temperature [K] | 310 |
Detector technology | PIXEL |
Collection date | 2020-10-30 |
Detector | DECTRIS EIGER2 S 16M |
Wavelength(s) | 1.033 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 39.976, 64.492, 137.210 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 68.610 - 1.960 |
R-factor | 0.1761 |
Rwork | 0.174 |
R-free | 0.20570 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.019 |
RMSD bond angle | 1.404 |
Data reduction software | DIMPLE (v2.6.1) |
Data scaling software | xia2 |
Phasing software | DIMPLE (v2.6.1) |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 68.610 | 2.028 |
High resolution limit [Å] | 1.960 | 1.960 |
Rmerge | 0.170 | 2.398 |
Rmeas | 0.184 | 2.593 |
Rpim | 0.071 | 0.976 |
Number of reflections | 26353 | 2573 |
<I/σ(I)> | 7.79 | 0.63 |
Completeness [%] | 99.8 | 99.03 |
Redundancy | 6.7 | 6.9 |
CC(1/2) | 0.996 | 0.358 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.5 | 293.15 | 30% PEG 3350, 200 mM Li2SO4, 100 mM bis-tris pH 5.5 |