8SEF
Crystal structure of Cy137C02, a monoclonal antibody isolated from macaques immunized with an Epstein-Barr virus glycoprotein 350 (gp350) nanoparticle vaccine
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 19-ID |
Synchrotron site | APS |
Beamline | 19-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-03-03 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 0.9792 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 145.389, 67.125, 50.244 |
Unit cell angles | 90.00, 106.01, 90.00 |
Refinement procedure
Resolution | 38.270 - 2.470 |
R-factor | 0.2266 |
Rwork | 0.222 |
R-free | 0.26350 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 8sic |
RMSD bond length | 0.002 |
RMSD bond angle | 0.620 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.17.1_3660) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.560 |
High resolution limit [Å] | 2.470 | 2.470 |
Rmeas | 0.132 | |
Number of reflections | 16004 | 1453 |
<I/σ(I)> | 11.1 | |
Completeness [%] | 95.2 | |
Redundancy | 2.9 | |
CC(1/2) | 0.759 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 291 | 1x PBS, Cryoprotectant: 3M ammonium sulfate, 10% glycerol |