8S7L
Crystal structure of a double mutant of VirB8-like OrfG central and C-terminal domains of Streptococcus thermophilus ICESt3 (Gram positive conjugative type IV secretion system).
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE MASSIF-3 |
Synchrotron site | ESRF |
Beamline | MASSIF-3 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-11-11 |
Detector | DECTRIS EIGER X 4M |
Wavelength(s) | 0.967697 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 152.743, 89.185, 98.424 |
Unit cell angles | 90.00, 112.31, 90.00 |
Refinement procedure
Resolution | 91.054 - 2.600 |
Rwork | 0.202 |
R-free | 0.25630 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.012 |
RMSD bond angle | 2.562 |
Data reduction software | XDS |
Data scaling software | pointless (1.12.15) |
Phasing software | MOLREP (11.9.02) |
Refinement software | REFMAC (5.8.0425) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 91.054 | 2.720 |
High resolution limit [Å] | 2.600 | 2.600 |
Rmerge | 0.062 | 0.665 |
Rmeas | 0.087 | 0.933 |
Rpim | 0.061 | 0.653 |
Number of reflections | 37215 | 4577 |
<I/σ(I)> | 10.6 | 1.8 |
Completeness [%] | 98.8 | 99.8 |
Redundancy | 3.1 | 3.3 |
CC(1/2) | 0.995 | 0.682 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | Droplet: 0.3 ul [protein (33mg/ml) in 50 mM Tris pH 8.0 + 100 mM NaCl] + 0.3 ul [reservoir] Reservoir: 50 ul [40% v/v PEG 300, 100 mM potassium phosphate citrate, pH 4.2] |