8S63
Low pH (5.5) as-isolated MSOX movie series dataset 3 of the copper nitrite reductase (NirK) from Bradyrhizobium japonicum USDA110 [1.71 MGy]
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I24 |
Synchrotron site | Diamond |
Beamline | I24 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-07-18 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.855 |
Spacegroup name | P 63 |
Unit cell lengths | 103.990, 103.990, 64.570 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 52.049 - 1.170 |
Rwork | 0.118 |
R-free | 0.14210 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.011 |
RMSD bond angle | 1.855 |
Data reduction software | xia2 |
Data scaling software | Aimless |
Phasing software | REFMAC |
Refinement software | REFMAC (5.8.0425) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 52.480 | 1.190 |
High resolution limit [Å] | 1.170 | 1.170 |
Rmerge | 0.057 | 1.698 |
Rmeas | 0.071 | 2.092 |
Rpim | 0.040 | 1.191 |
Number of reflections | 132306 | 6482 |
<I/σ(I)> | 9.2 | |
Completeness [%] | 99.1 | |
Redundancy | 4.3 | 3.8 |
CC(1/2) | 0.998 | 0.327 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.5 | 293 | 50 mM Hepes pH 5.5, 1.8 M Ammonium Sulphate |