8S3W
LysTt72, a lytic endopeptidase from Thermus thermophilus MAT72 phage vB_Tt72
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P13 (MX1) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2023-08-28 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.9790 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 44.270, 60.870, 124.680 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 62.340 - 2.394 |
Rwork | 0.186 |
R-free | 0.28110 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.007 |
RMSD bond angle | 1.689 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0425) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 99.000 | 2.490 |
High resolution limit [Å] | 2.390 | 2.390 |
Rmeas | 0.194 | 1.849 |
Number of reflections | 13865 | 1947 |
<I/σ(I)> | 9.94 | 1.31 |
Completeness [%] | 99.8 | |
Redundancy | 13.2 | |
CC(1/2) | 0.996 | 0.863 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 293 | 20% v/v PEG 500 MME, 10% w/v PEG 20000, 30 mM sodium nitrate, 30 mM sodium phosphate dibasic, 30 mM ammonium sulfate, 0.1 M 6.5 imidazole/MES monohydrate (acid) at pH 6.5 |