8S17
c-KIT kinase domain in complex with ponatinib
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X10SA |
Synchrotron site | SLS |
Beamline | X10SA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2023-06-17 |
Detector | DECTRIS EIGER2 X 16M |
Wavelength(s) | 1.00006 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 88.010, 90.610, 91.410 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 45.310 - 2.200 |
R-factor | 0.2026 |
Rwork | 0.201 |
R-free | 0.22820 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.002 |
RMSD bond angle | 0.525 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 45.710 | 2.300 |
High resolution limit [Å] | 2.200 | 2.200 |
Number of reflections | 37763 | 4621 |
<I/σ(I)> | 10.58 | |
Completeness [%] | 100.0 | |
Redundancy | 13.54 | |
CC(1/2) | 0.993 | 0.684 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 285.15 | protein concentration: 4 mg/mL, 14% PEG6000, 200 mM LiCl, 100 mM Tris, pH 7.0 |