8S13
apo c-KIT-wt kinase domain
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X10SA |
Synchrotron site | SLS |
Beamline | X10SA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-03-31 |
Detector | DECTRIS EIGER2 X 16M |
Wavelength(s) | 0.9999 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 99.280, 69.320, 56.130 |
Unit cell angles | 90.00, 117.72, 90.00 |
Refinement procedure
Resolution | 44.860 - 2.000 |
R-factor | 0.206 |
Rwork | 0.204 |
R-free | 0.23570 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.004 |
RMSD bond angle | 0.602 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 44.860 | 2.100 |
High resolution limit [Å] | 2.000 | 2.000 |
Number of reflections | 22876 | 3112 |
<I/σ(I)> | 14.2 | |
Completeness [%] | 99.6 | |
Redundancy | 6.9 | |
CC(1/2) | 0.998 | 0.686 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.5 | 277.15 | protein concentration: 6.6 mg/mL, 16% PEG8000, 20% ethylene glycole, 100 mM bicine, 30 mM NaI, 30 mM NaBr, 30 mM NaF |