8S0U
Structure of the LytM domain of PrgK from E. faecalis
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID30B |
Synchrotron site | ESRF |
Beamline | ID30B |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-09-20 |
Detector | DECTRIS EIGER2 X 9M |
Wavelength(s) | 1 |
Spacegroup name | P 1 |
Unit cell lengths | 53.320, 53.690, 56.350 |
Unit cell angles | 63.30, 70.37, 70.16 |
Refinement procedure
Resolution | 49.130 - 1.500 |
R-factor | 0.1775 |
Rwork | 0.177 |
R-free | 0.20800 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.012 |
RMSD bond angle | 1.090 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 49.130 | 1.554 |
High resolution limit [Å] | 1.500 | 1.500 |
Rmerge | 0.085 | 0.296 |
Rmeas | 0.120 | 0.419 |
Number of reflections | 76646 | 7437 |
<I/σ(I)> | 6.98 | 2.9 |
Completeness [%] | 93.3 | 90.66 |
Redundancy | 1.9 | |
CC(1/2) | 0.911 | 0.797 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | EVAPORATION | 7.5 | 293.15 | 0.2 M Ammonium sulfate, 0.1 M Sodium acetate, pH 4.6, 30 % w/v PEG 2000 MME |