8RMH
Crystal structure of parallel G-quadruplex containing T-tetrads and TG-octaplet
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I23 |
Synchrotron site | Diamond |
Beamline | I23 |
Temperature [K] | 293.15 |
Detector technology | PIXEL |
Collection date | 2023-09-18 |
Detector | DECTRIS PILATUS 12M |
Wavelength(s) | 1.1271 |
Spacegroup name | P 4 21 2 |
Unit cell lengths | 40.436, 40.436, 40.479 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 40.480 - 1.150 |
R-factor | 0.1536 |
Rwork | 0.151 |
R-free | 0.19000 |
Structure solution method | SAD |
RMSD bond length | 0.011 |
RMSD bond angle | 1.277 |
Data reduction software | DIALS |
Data scaling software | XSCALE |
Phasing software | ACORN |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 40.480 | 1.170 |
High resolution limit [Å] | 1.150 | 1.150 |
Number of reflections | 12480 | 589 |
<I/σ(I)> | 0.353 | |
Completeness [%] | 100.0 | |
Redundancy | 126.9 | |
CC(1/2) | 1.000 | 0.567 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293.15 | A solution containing DNA 1.8 mM, 0.02 M Sodium Cacodylate pH 5.5, 0.1 M NaCl, 0.01 mM MgCl2 was mixed 1:1 with a solution containing 0.2 M Potassium chloride, 0.05 M Sodium cacodylate trihydrate pH 5.9, 10% w/v Polyethylene glycol 4000 & 0.01 M Magnesium chloride hexahydrate. |