8RER
Major groove intercalation with Polypyridyl Ruthenium complex
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I03 |
Synchrotron site | Diamond |
Beamline | I03 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2023-09-27 |
Detector | DECTRIS EIGER2 XE 16M |
Wavelength(s) | 0.97623 |
Spacegroup name | P 41 |
Unit cell lengths | 32.676, 32.676, 103.988 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 32.680 - 1.200 |
R-factor | 0.173 |
Rwork | 0.172 |
R-free | 0.20250 |
Structure solution method | SAD |
RMSD bond length | 0.006 |
RMSD bond angle | 2.267 |
Data reduction software | DIALS |
Data scaling software | xia2 |
Phasing software | SHELXDE |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 32.680 | 3.260 |
High resolution limit [Å] | 1.200 | 1.200 |
Rmerge | 0.069 | |
Rmeas | 0.072 | |
Rpim | 0.020 | |
Number of reflections | 33977 | 1710 |
<I/σ(I)> | 0.828 | |
Completeness [%] | 100.0 | |
Redundancy | 13.6 | |
CC(1/2) | 0.998 | 0.700 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.86 | 278 | A solution containing 0.6 mM DNA, 20 mM Sodium Cacodylate pH 5.5, 100 mM NaCl, 10 mM MgCl2 and 1.6 mM [Ru(TAP)2(11-CN-dppz)] was mixed in a 1:1 ratio with a solution containing 80.6 mM KCl, 40 mM Sodium cacodylate trihydrate pH 5.86, 55% -2-Methyl-2,4-pentanediol, 120 mM Spermine tetrahydrochloride. |