8RE8
Aspartyl/Asparaginyl beta-hydroxylase (AspH) R688Q variant in complex with Mn, (3R)-methyl-2-oxoglutarate and a Factor X derived peptide fragment
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I03 |
Synchrotron site | Diamond |
Beamline | I03 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2023-05-03 |
Detector | DECTRIS EIGER2 XE 16M |
Wavelength(s) | 0.9763 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 50.604, 85.998, 123.963 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 46.850 - 1.850 |
R-factor | 0.1788 |
Rwork | 0.177 |
R-free | 0.20820 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.004 |
RMSD bond angle | 0.614 |
Data reduction software | xia2 |
Data scaling software | xia2 |
Phasing software | PHASER |
Refinement software | PHENIX ((1.20.1_4487: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 46.850 | 1.880 |
High resolution limit [Å] | 1.850 | 1.850 |
Rmerge | 0.130 | 1.954 |
Rmeas | 0.135 | 2.033 |
Rpim | 0.037 | 0.555 |
Total number of observations | 630202 | |
Number of reflections | 47230 | 2317 |
<I/σ(I)> | 13.4 | 1.2 |
Completeness [%] | 100.0 | |
Redundancy | 13.3 | 13 |
CC(1/2) | 0.998 | 0.652 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 298 | 0.1 M HEPES pH 7.5, 0.2 M NaCl, 20% PEG 3350 |