8QQ7
Structure of SpNOX: a Bacterial NADPH oxidase
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE MASSIF-1 |
Synchrotron site | ESRF |
Beamline | MASSIF-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-05-11 |
Detector | DECTRIS PILATUS3 2M |
Wavelength(s) | 0.966 |
Spacegroup name | P 64 2 2 |
Unit cell lengths | 145.967, 145.967, 153.619 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 47.820 - 3.620 |
R-factor | 0.2642 |
Rwork | 0.262 |
R-free | 0.32003 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | model from PROMALS3D and I-TASSER |
RMSD bond length | 0.006 |
RMSD bond angle | 1.727 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 47.820 | 3.950 |
High resolution limit [Å] | 3.620 | 3.620 |
Rmerge | 0.072 | 2.000 |
Rmeas | 0.074 | |
Rpim | 0.017 | 0.465 |
Number of reflections | 5508 | 275 |
<I/σ(I)> | 19.6 | 1.5 |
Completeness [%] | 90.9 | 85.4 |
Redundancy | 20 | 20 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | Protein: 4.04 mg/ml in 50 mM Tris pH 7, 300 mM NaCl, 0.025 mM MNG3, 0.01 mM FAD. Crystallization condition: 30.5% PEG 300, 0.15 M Li2SO4, 0.15 M NaCl and 0.1 M MES pH6. Drop: 6 uL of protein + 6 uL of well. |