8QMF
Transketolase from Vibrio vulnificus in complex with thiamin pyrophosphate
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | ESRF BEAMLINE ID23-1 |
| Synchrotron site | ESRF |
| Beamline | ID23-1 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2022-04-15 |
| Detector | DECTRIS PILATUS 6M |
| Wavelength(s) | 0.8856 |
| Spacegroup name | P 1 21 1 |
| Unit cell lengths | 69.230, 75.480, 130.390 |
| Unit cell angles | 90.00, 99.87, 90.00 |
Refinement procedure
| Resolution | 34.950 - 2.100 |
| R-factor | 0.1647 |
| Rwork | 0.163 |
| R-free | 0.20700 |
| Structure solution method | MOLECULAR REPLACEMENT |
| RMSD bond length | 0.007 |
| RMSD bond angle | 0.823 |
| Data reduction software | XDS |
| Data scaling software | XSCALE |
| Phasing software | PHENIX |
| Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 34.950 | 2.200 |
| High resolution limit [Å] | 2.100 | 2.100 |
| Rmeas | 0.087 | 0.896 |
| Number of reflections | 76983 | 9913 |
| <I/σ(I)> | 11.66 | 1.95 |
| Completeness [%] | 99.4 | 99.6 |
| Redundancy | 3.19 | 3.19 |
| CC(1/2) | 0.997 | 0.675 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 293 | 0.16 M calcium acetate, 0.08 M sodium cacodylate pH 6.5, 14.4% PEG 8000, 20% glycerol |
