8QLF
Crystal structure of the light-driven sodium pump ErNaR in the monomeric form at pH 8.8
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P14 (MX2) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-02-21 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.976 |
Spacegroup name | P 61 2 2 |
Unit cell lengths | 53.382, 53.382, 364.842 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 20.000 - 1.710 |
R-factor | 0.18443 |
Rwork | 0.183 |
R-free | 0.21819 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.003 |
RMSD bond angle | 1.046 |
Data reduction software | XDS |
Data scaling software | STARANISO |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 46.230 | 1.875 |
High resolution limit [Å] | 1.707 | 1.707 |
Rpim | 0.038 | 0.518 |
Number of reflections | 26414 | 1321 |
<I/σ(I)> | 13.769 | 1.59 |
Completeness [%] | 94.7 | |
Redundancy | 37.6 | |
CC(1/2) | 0.999 | 0.744 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | LIPIDIC CUBIC PHASE | 8.8 | 293 | 0.1M sodium acetate, 10% PEG550MME, soaked in 0.1M Tris-HCl pH 8.8, 10% PEG550MME prior to crystal harvesting. |