8QJ0
Room-temperature Serial Synchrotron Crystallography structure of Spinacia oleracea RuBisCO
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P14 (MX2) |
Temperature [K] | 293 |
Detector technology | PIXEL |
Collection date | 2022-11-04 |
Detector | DECTRIS EIGER X 4M |
Wavelength(s) | 0.976 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 158.600, 157.120, 202.740 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 97.780 - 2.300 |
Rwork | 0.181 |
R-free | 0.22740 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.012 |
RMSD bond angle | 2.149 |
Data reduction software | CrystFEL (0.10.2) |
Data scaling software | CrystFEL (0.10.2) |
Phasing software | PHASER (2.8.3) |
Refinement software | REFMAC (5.8.0419) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 97.780 | 2.382 |
High resolution limit [Å] | 2.300 | 2.300 |
Number of reflections | 112061 | 5554 |
<I/σ(I)> | 7.96 | 3.66 |
Completeness [%] | 100.0 | 100 |
Redundancy | 770 | 528 |
CC(1/2) | 0.994 | 0.952 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | SpRub solution at a concentration of 15 mg/mL (in a buffer of 20 mM HEPES, 5 mM MgCl2, pH 8.0), combined reservoir solution (0.2 M MgCl2x6H2O, 0.1 M Tris pH 7.0, 12% w/v PEG 8000 |