8QGB
Crystal structure of NAD kinase 1 from Listeria monocytogenes in complex with a di-adenosine derivative
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID14-4 |
Synchrotron site | ESRF |
Beamline | ID14-4 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2012-09-16 |
Detector | ADSC QUANTUM 210 |
Wavelength(s) | 0.933400 |
Spacegroup name | I 2 2 2 |
Unit cell lengths | 62.820, 75.780, 118.830 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 35.104 - 2.270 |
R-factor | 0.2095 |
Rwork | 0.208 |
R-free | 0.23620 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.015 |
RMSD bond angle | 0.807 |
Data reduction software | MOSFLM |
Data scaling software | Aimless |
Phasing software | PHENIX |
Refinement software | PHENIX ((1.13_2998: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 37.890 | 2.340 |
High resolution limit [Å] | 2.270 | 2.270 |
Rmerge | 0.089 | 0.716 |
Rmeas | 0.099 | 0.808 |
Rpim | 0.043 | 0.366 |
Total number of observations | 67319 | 5642 |
Number of reflections | 12967 | 1202 |
<I/σ(I)> | 14.5 | 2.1 |
Completeness [%] | 96.3 | |
Redundancy | 5.2 | 4.7 |
CC(1/2) | 0.998 | 0.713 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 291.15 | 30 mM NaBr, 220 mM Kcitrate, glycerol 6%, 15-16% w/v PEG400 |