Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

8QAY

Medicago truncatula HISN5 (IGPD) in complex with MN, FMT, ACT, CIT, EDO, SO4

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU PhotonJet-R
Temperature [K]100
Detector technologyPIXEL
Collection date2020-07-30
DetectorRIGAKU HyPix-6000HE
Wavelength(s)1.5418
Spacegroup nameH 3
Unit cell lengths137.600, 137.600, 265.650
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution36.400 - 2.200
R-factor0.1895
Rwork0.189
R-free0.23140
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.007
RMSD bond angle0.929
Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwarePHASER (1.20.1_4487)
Refinement softwarePHENIX (1.20.1_4487)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]80.0002.260
High resolution limit [Å]2.2002.200
Rmerge0.1921.110
Rmeas0.2341.347
Number of reflections937976685
<I/σ(I)>5.721.22
Completeness [%]98.895
Redundancy2.99
CC(1/2)0.9860.470
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP7.52910.1 M carboxylic acids (0.2 M sodium formate, 0.2 M ammonium acetate, 0.2M sodium citrate tribasic dihydrate, 0.2 M potassium sodium tartrate tetrahydrate, 0.2 M sodium oxamate); 1.0 M sodium HEPES, MOPS (acid), 40% glycerol, 20% w/v PEG 4000

238268

PDB entries from 2025-07-02

PDB statisticsPDBj update infoContact PDBjnumon