8Q37
Crystal structure of YTHDC1 in complex with Compound 18 (ZA_312)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06DA |
Synchrotron site | SLS |
Beamline | X06DA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-06-17 |
Detector | DECTRIS PILATUS 2M-F |
Wavelength(s) | 1 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 39.950, 103.550, 42.230 |
Unit cell angles | 90.00, 104.73, 90.00 |
Refinement procedure
Resolution | 38.640 - 1.280 |
R-factor | 0.2118 |
Rwork | 0.211 |
R-free | 0.23340 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.006 |
RMSD bond angle | 0.980 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 38.640 | 1.360 |
High resolution limit [Å] | 1.280 | 1.280 |
Number of reflections | 83615 | 13331 |
<I/σ(I)> | 10.85 | |
Completeness [%] | 97.6 | |
Redundancy | 3.41 | |
CC(1/2) | 0.997 | 0.426 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 295 | 25% PEG 3350, 0.2M Ammonium Sulphate, 0.1M Bis-Tris pH 6.5 |