8Q14
Endothiapepsin in complex with ligand (3R,5R)-3-(2-((methyl(prop-2-yn-1-yl)amino)methyl)thiazol-4-yl)-5-(3-(2-nitro-4-(trifluoromethyl)phenyl)-1,2,4-oxadiazol-5-yl)pyrrolidin-3-ol (CBWS-SE-171)
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | PETRA III, DESY BEAMLINE P11 |
| Synchrotron site | PETRA III, DESY |
| Beamline | P11 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2022-12-14 |
| Detector | DECTRIS EIGER2 X 16M |
| Wavelength(s) | 0.688813 |
| Spacegroup name | P 1 21 1 |
| Unit cell lengths | 45.078, 72.663, 52.646 |
| Unit cell angles | 90.00, 109.41, 90.00 |
Refinement procedure
| Resolution | 39.410 - 1.130 |
| R-factor | 0.16 |
| Rwork | 0.159 |
| R-free | 0.17760 |
| Structure solution method | MOLECULAR REPLACEMENT |
| RMSD bond length | 0.004 |
| RMSD bond angle | 0.814 |
| Data reduction software | XDS |
| Data scaling software | XDS |
| Phasing software | PHASER |
| Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 50.000 | 1.190 |
| High resolution limit [Å] | 1.130 | 1.130 |
| Number of reflections | 118845 | 19201 |
| <I/σ(I)> | 11.84 | 1.3 |
| Completeness [%] | 98.5 | 98.8 |
| Redundancy | 3.5 | 3.57 |
| CC(1/2) | 0.999 | 0.608 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 4.6 | 292 | Protein at 5 mg/mL in 100 mM ammoniumacetate pH 4.6, reservoir: 100 mM ammoniumacetate, 100 mM sodium acetate pH 4.6, 24 % PEG4000, 292 K, 2+2 yL drops over 1 mL reservoir, streak seeding |






