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8Q11

Endothiapepsin in complex with ligand (3R,5R)-5-(3-(4-fluorophenyl)-1,2,4-oxadiazol-5-yl)-3-(2-((methyl(prop-2-yn-1-yl)amino)methyl)thiazol-4-yl)pyrrolidin-3-ol (CBWS-SE-126)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsESRF BEAMLINE ID23-1
Synchrotron siteESRF
BeamlineID23-1
Temperature [K]100
Detector technologyPIXEL
Collection date2022-07-07
DetectorDECTRIS EIGER2 X 16M
Wavelength(s)0.99187
Spacegroup nameP 1 21 1
Unit cell lengths44.803, 72.529, 52.270
Unit cell angles90.00, 108.80, 90.00
Refinement procedure
Resolution29.250 - 1.300
R-factor0.1554
Rwork0.154
R-free0.17860
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.004
RMSD bond angle0.763
Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwarePHASER
Refinement softwarePHENIX (1.20.1_4487)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0001.380
High resolution limit [Å]1.3001.300
Number of reflections7702212208
<I/σ(I)>8.952
Completeness [%]98.797.1
Redundancy3.83.85
CC(1/2)0.9950.774
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP4.6292Protein at 5 mg/mL in 100 mM ammoniumacetate pH 4.6, reservoir: 100 mM ammoniumacetate, 100 mM sodium acetate pH 4.6, 24 % PEG4000, 292 K, 2+2 yL drops over 1 mL reservoir, streak seeding

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PDB entries from 2024-08-07

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