8Q00
TssM-Ub-PA complex - A USP-like DUB from B. pseudomallei (193-430) reacted with Ub-PA
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06SA |
Synchrotron site | SLS |
Beamline | X06SA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-05-11 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.00000 |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 103.750, 103.750, 191.520 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 91.220 - 1.620 |
R-factor | 0.17473 |
Rwork | 0.174 |
R-free | 0.19822 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.011 |
RMSD bond angle | 1.760 |
Data reduction software | XDS (BUILT=20210323) |
Data scaling software | XSCALE (BUILT=20210323) |
Phasing software | PHASER (2.8.3) |
Refinement software | REFMAC (5.8.0419) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 103.740 | 103.740 | 1.660 |
High resolution limit [Å] | 1.620 | 7.240 | 1.620 |
Rmerge | 0.076 | 0.039 | 2.335 |
Rmeas | 0.080 | 0.042 | 2.425 |
Number of reflections | 132701 | 1648 | 9702 |
<I/σ(I)> | 18.54 | 1.19 | |
Completeness [%] | 99.9 | ||
Redundancy | 13.42 | ||
CC(1/2) | 0.999 | 0.997 | 0.516 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 293 | 0.2 M ammonium citrate dibasic and 22 % w/v PEG 3350; 1:2, 1:1, 2:1 protein:reservoir ration; cryoprotected with reservoir + 25% ethylene glycol |