8PZ7
crystal structure of VDR complex with D-Bishomo-1a,25-dihydroxyvitamin D3 Analog 57
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SOLEIL BEAMLINE PROXIMA 2 |
Synchrotron site | SOLEIL |
Beamline | PROXIMA 2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-12-09 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 0.98 |
Spacegroup name | P 65 2 2 |
Unit cell lengths | 66.240, 66.240, 264.040 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 48.060 - 2.930 |
R-factor | 0.2023 |
Rwork | 0.196 |
R-free | 0.25710 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.007 |
RMSD bond angle | 0.914 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHENIX |
Refinement software | PHENIX ((1.20.1_4487: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.070 | 3.040 |
High resolution limit [Å] | 2.930 | 2.930 |
Number of reflections | 8045 | 750 |
<I/σ(I)> | 25.4 | |
Completeness [%] | 99.6 | |
Redundancy | 2 | |
CC(1/2) | 1.000 | 0.948 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 293 | NH4Acetate 3.5M, BisTrisPropane 0.1M pH 7 |