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8PZ7

crystal structure of VDR complex with D-Bishomo-1a,25-dihydroxyvitamin D3 Analog 57

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSOLEIL BEAMLINE PROXIMA 2
Synchrotron siteSOLEIL
BeamlinePROXIMA 2
Temperature [K]100
Detector technologyPIXEL
Collection date2022-12-09
DetectorDECTRIS EIGER X 9M
Wavelength(s)0.98
Spacegroup nameP 65 2 2
Unit cell lengths66.240, 66.240, 264.040
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution48.060 - 2.930
R-factor0.2023
Rwork0.196
R-free0.25710
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.007
RMSD bond angle0.914
Data reduction softwareXDS
Data scaling softwareAimless
Phasing softwarePHENIX
Refinement softwarePHENIX ((1.20.1_4487: ???))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]48.0703.040
High resolution limit [Å]2.9302.930
Number of reflections8045750
<I/σ(I)>25.4
Completeness [%]99.6
Redundancy2
CC(1/2)1.0000.948
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP7293NH4Acetate 3.5M, BisTrisPropane 0.1M pH 7

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