8PRF
The structure of nvBagel5
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID23-2 |
Synchrotron site | ESRF |
Beamline | ID23-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-07-03 |
Detector | DECTRIS PILATUS3 X 2M |
Wavelength(s) | 0.87313 |
Spacegroup name | I 4 2 2 |
Unit cell lengths | 56.183, 56.183, 109.806 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 39.730 - 2.800 |
R-factor | 0.2073 |
Rwork | 0.204 |
R-free | 0.27300 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.009 |
RMSD bond angle | 1.105 |
Data reduction software | DIALS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX ((1.20.1_4487: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.020 | 2.950 |
High resolution limit [Å] | 2.800 | 2.800 |
Rmerge | 0.286 | 0.603 |
Rmeas | 0.291 | 0.611 |
Rpim | 0.049 | 0.100 |
Total number of observations | 81171 | 12335 |
Number of reflections | 2374 | 334 |
<I/σ(I)> | 25.1 | 12.1 |
Completeness [%] | 100.0 | |
Redundancy | 34.2 | 36.9 |
CC(1/2) | 0.993 | 0.994 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 8 | 293.15 | 0.2M ZnAcetate, 0.1M Imidazole pH8.0, 25% 1-2 propanol, 10% glycerol |