8PQK
APO crystal structure of PDGFRA-T674I kinase domain
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X10SA |
Synchrotron site | SLS |
Beamline | X10SA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-08-29 |
Detector | DECTRIS EIGER2 X 16M |
Wavelength(s) | 1.00003 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 95.900, 49.020, 76.980 |
Unit cell angles | 90.00, 100.69, 90.00 |
Refinement procedure
Resolution | 43.810 - 2.000 |
R-factor | 0.1974 |
Rwork | 0.196 |
R-free | 0.22190 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.002 |
RMSD bond angle | 0.473 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 47.120 | 2.100 |
High resolution limit [Å] | 2.000 | 2.000 |
Rmeas | 0.129 | 0.851 |
Number of reflections | 23810 | 3145 |
<I/σ(I)> | 9.24 | 2.04 |
Completeness [%] | 99.3 | 98.1 |
Redundancy | 6.82 | 6.69 |
CC(1/2) | 0.997 | 0.782 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 293.15 | 10 mg/mL, 22% PEG3350, 100 mM Bis-Tris-Propane, pH 7.5 |